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We integrated new and existing bedrock and detrital zircon dates from the Zealandia Cordillera to explore the tempo of Phanerozoic arc magmatism along the paleo-Pacific margin of southeast Gondwana. We found that episodic magmatism was dominated by two high-magma-addition-rate (MAR) events spaced ∼250 m.y. apart in the Devonian (370–368 Ma) and the Early Cretaceous (129–105 Ma). The intervening interval between high-MAR events was characterized by prolonged, low-MAR activity in a geographically stable location for more than 100 m.y. We found that the two high-MAR events in Zealandia have distinct chemistries (S-type for the Devonian and I-type for the Cretaceous) and are unlikely to have been related by a repeating, cyclical process. Like other well-studied arc systems worldwide, the Zealandia Cordillera high-MAR events were associated with upper-plate deformation; however, the magmatic events were triggered by enhanced asthenospheric mantle melting in two distinct arc-tectonic settings—a retreating slab and an advancing slab, respectively. Our results demonstrate that dynamic changes in the subducting slab were primary controls in triggering mantle flare-up events in the Phanerozoic Zealandia Cordillera.